Aquaculture

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Outputs related to Aquaculture

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Article

Seasonal effects on growth and product quality in Atlantic salmon fed diets containing terrestrial oils as assessed by a long-term, on-farm growth trial

Mock TS, Francis DS, Jago MK, Miles PC, Glencross BD, Smullen RP, Keast RSJ & Turchini GM (2021) Seasonal effects on growth and product quality in Atlantic salmon fed diets containing terrestrial oils as assessed by a long-term, on-farm growth trial. Aquaculture Nutrition, 27 (2), pp. 477-490. https://doi.org/10.1111/anu.13200

Article

Dietary soybean oil aggravates the adverse effects of low salinity on intestinal health in juvenile mud crab Scylla paramamosain

Luo J, Zhang Y, Zhou Q, Betancor MB, Tocher DR, Lu J, Yuan Y, Zhu T, Jiao L, Wang X, Zhao M, Hu X & Jin M (2021) Dietary soybean oil aggravates the adverse effects of low salinity on intestinal health in juvenile mud crab Scylla paramamosain. Ecotoxicology and Environmental Safety, 213, Art. No.: 112004. https://doi.org/10.1016/j.ecoenv.2021.112004

Article

Dietary organic zinc promotes growth, immune response and antioxidant capacity by modulating zinc signaling in juvenile Pacific white shrimp (Litopenaeus vannamei)

Shi B, Xu F, Zhou Q, Regan MK, Betancor MB, Tocher DR, Sun M, Meng F, Jiao L & Jin M (2021) Dietary organic zinc promotes growth, immune response and antioxidant capacity by modulating zinc signaling in juvenile Pacific white shrimp (Litopenaeus vannamei). Aquaculture Reports, 19, Art. No.: 100638. https://doi.org/10.1016/j.aqrep.2021.100638

Article

Investigation of deltamethrin resistance in salmon lice (Lepeophtheirus salmonis) provides no evidence for roles of mutations in voltage-gated sodium channels

Tschesche C, Bekaert M, Bassett DI, Mitchell C, North B, Boyd S, Carmona‐Antoñanzas G, Bron JE & Sturm A (2021) Investigation of deltamethrin resistance in salmon lice (Lepeophtheirus salmonis) provides no evidence for roles of mutations in voltage-gated sodium channels. Pest Management Science, 77 (2), pp. 1052-1060. https://doi.org/10.1002/ps.6120

Article

Community Parameters and Genome-Wide RAD-Seq Loci of Ceratothoa oestroides Imply Its Transfer between Farmed European Sea Bass and Wild Farm-Aggregating Fish

Mladineo I, Hrabar J, Trumbić Ž, Manousaki T, Tsakogiannis A, Taggart JB & Tsigenopoulos CS (2021) Community Parameters and Genome-Wide RAD-Seq Loci of Ceratothoa oestroides Imply Its Transfer between Farmed European Sea Bass and Wild Farm-Aggregating Fish. Pathogens, 10 (2), Art. No.: 100. https://doi.org/10.3390/pathogens10020100

Article

Novel Dermatitis and Relative Viral Nucleic Acid Tissue Loads in a Fin Whale (Balaenoptera physalus) with Systemic Cetacean Morbillivirus Infection

Dagleish MP, Perri A, Maley M, Ballingall KT, Baily JL, Davison NJ, Brownlow AC & Rocchi MS (2021) Novel Dermatitis and Relative Viral Nucleic Acid Tissue Loads in a Fin Whale (Balaenoptera physalus) with Systemic Cetacean Morbillivirus Infection. Journal of Comparative Pathology, 183, pp. 57-62. https://doi.org/10.1016/j.jcpa.2021.01.005

Article

Plasticity in Reproductive Traits, Condition and Energy Allocation of the Non-Native Pyrenean Gudgeon Gobio lozanoi in a Highly Regulated Mediterranean River Basin

Amat-Trigo F, Torralva M, González-Silvera D, Martínez-López FJ & Oliva-Paterna FJ (2021) Plasticity in Reproductive Traits, Condition and Energy Allocation of the Non-Native Pyrenean Gudgeon Gobio lozanoi in a Highly Regulated Mediterranean River Basin. Water, 13 (3), Art. No.: 387. https://doi.org/10.3390/w13030387

Article

Dietary DHA/EPA ratio affects growth, tissue fatty acid profiles and expression of genes involved in lipid metabolism in mud crab Scylla paramamosain supplied with appropriate n-3 LC-PUFA at two lipid levels

Wang X, Jin M, Cheng X, Hu X, Zhao M, Yuan Y, Sun P, Jiao L, Betancor M, Tocher D & Zhou Q (2021) Dietary DHA/EPA ratio affects growth, tissue fatty acid profiles and expression of genes involved in lipid metabolism in mud crab Scylla paramamosain supplied with appropriate n-3 LC-PUFA at two lipid levels. Aquaculture, 532, Art. No.: 736028. https://doi.org/10.1016/j.aquaculture.2020.736028

Article

Transcriptomic and physiological analyses of hepatopancreas reveal the key metabolic changes in response to dietary copper level in Pacific white shrimp Litopenaeus vannamei

Shi B, Yuan Y, Jin M, Betancor MB, Tocher DR, Jiao L, Song D & Zhou Q (2021) Transcriptomic and physiological analyses of hepatopancreas reveal the key metabolic changes in response to dietary copper level in Pacific white shrimp Litopenaeus vannamei. Aquaculture, 532, Art. No.: 736060. https://doi.org/10.1016/j.aquaculture.2020.736060

Article

Increased robustness of postlarvae and juveniles from non-ablated Pacific whiteleg shrimp, Penaeus vannamei, broodstock post-challenged with pathogenic isolates of Vibrio parahaemolyticus (VpAHPND) and white spot disease (WSD)

Zacarias S, Fegan D, Wangsoontorn S, Yamuen N, Limakom T, Carboni S, Davie A, Metselaar M, Little DC & Shinn AP (2021) Increased robustness of postlarvae and juveniles from non-ablated Pacific whiteleg shrimp, Penaeus vannamei, broodstock post-challenged with pathogenic isolates of Vibrio parahaemolyticus (VpAHPND) and white spot disease (WSD). Aquaculture, 532, Art. No.: 736033. https://doi.org/10.1016/j.aquaculture.2020.736033

Article

First Succinylome Profiling of Vibrio alginolyticus Reveals Key Role of Lysine Succinylation in Cellular Metabolism and Virulence

Zeng F, Pang H, Chen Y, Zheng H, Li W, Ramanathan S, Hoare R, Monaghan SJ, Lin X & Jian J (2021) First Succinylome Profiling of Vibrio alginolyticus Reveals Key Role of Lysine Succinylation in Cellular Metabolism and Virulence. Frontiers in Cellular and Infection Microbiology, 10, Art. No.: 626574. https://doi.org/10.3389/fcimb.2020.626574

Article

Effects of different dietary oil sources on growth performance, antioxidant capacity and lipid deposition of juvenile golden pompano Trachinotus ovatus

Guo H, Chen C, Yan X, Li Y, Wen X, You C, Monroig Ó, Tocher DR & Wang S (2021) Effects of different dietary oil sources on growth performance, antioxidant capacity and lipid deposition of juvenile golden pompano Trachinotus ovatus. Aquaculture, 530, Art. No.: 735923. https://doi.org/10.1016/j.aquaculture.2020.735923

Article

Cloning and characterisation of NMDA receptors in the Pacific oyster, Crassostrea gigas (Thunberg, 1793) in relation to metamorphosis and catecholamine synthesis

Vogeler S, Carboni S, Li X, Ireland JH, Miller-Ezzy P & Joyce A (2021) Cloning and characterisation of NMDA receptors in the Pacific oyster, Crassostrea gigas (Thunberg, 1793) in relation to metamorphosis and catecholamine synthesis. Developmental Biology, 469, pp. 144-159. https://doi.org/10.1016/j.ydbio.2020.10.008

Article

A commercial autogenous injection vaccine protects ballan wrasse (Labrus bergylta, ascanius) against aeromonas salmonicida vapA type V

Ramirez-Paredes JG, Verner-Jeffreys D, Papadopoulou A, Monaghan SJ, Smith L, Haydon D, Wallis TS, Davie A, Adams A & Migaud H (2020) A commercial autogenous injection vaccine protects ballan wrasse (Labrus bergylta, ascanius) against aeromonas salmonicida vapA type V. Fish and Shellfish Immunology, 107 (Part A), pp. 43-53. https://doi.org/10.1016/j.fsi.2020.09.040

Article

miRNAs Predicted to Regulate Host Anti-viral Gene Pathways in IPNV-Challenged Atlantic Salmon Fry Are Affected by Viral Load, and Associated With the Major IPN Resistance QTL Genotypes in Late Infection

Woldemariam NT, Agafonov O, Sindre H, Høyheim B, Houston RD, Robledo D, Bron JE & Andreassen R (2020) miRNAs Predicted to Regulate Host Anti-viral Gene Pathways in IPNV-Challenged Atlantic Salmon Fry Are Affected by Viral Load, and Associated With the Major IPN Resistance QTL Genotypes in Late Infection. Frontiers in Immunology, 11, Art. No.: 2113. https://doi.org/10.3389/fimmu.2020.02113

Article

Campylobacter pinnipediorum subsp. caledonicus and C. pinnipediorum subsp. pinnipediorum recovered from abscesses in pinnipeds

Foster G, Baily JL, Howie F, Brownlow AC, Wagenaar JA, Gilbert MJ, Miller WG, Byrne BA, Clothier KA, Schmitt T, Patterson T, Reid RJ & Dagleish MP (2020) Campylobacter pinnipediorum subsp. caledonicus and C. pinnipediorum subsp. pinnipediorum recovered from abscesses in pinnipeds. Diseases of Aquatic Organisms, 142, pp. 41-46. https://doi.org/10.3354/dao03544

Article

Dietary Lipid:Protein Ratio and n-3 Long-Chain Polyunsaturated Fatty Acids Alters the Gut Microbiome of Atlantic Salmon Under Hypoxic and Normoxic Conditions

Huyben D, Roehe BK, Bekaert M, Ruyter B & Glencross B (2020) Dietary Lipid:Protein Ratio and n-3 Long-Chain Polyunsaturated Fatty Acids Alters the Gut Microbiome of Atlantic Salmon Under Hypoxic and Normoxic Conditions. Frontiers in Microbiology, 11, Art. No.: 589898. https://doi.org/10.3389/fmicb.2020.589898

Article

Innovation in Nucleotide-Binding Oligomerization-Like Receptor and Toll-Like Receptor Sensing Drives the Major Histocompatibility Complex-II Free Atlantic Cod Immune System

Jin X, Morro B, Tørresen OK, Moiche V, Solbakken MH, Jakobsen KS, Jentoft S & MacKenzie S (2020) Innovation in Nucleotide-Binding Oligomerization-Like Receptor and Toll-Like Receptor Sensing Drives the Major Histocompatibility Complex-II Free Atlantic Cod Immune System. Frontiers in Immunology, 11, Art. No.: 609456. https://doi.org/10.3389/fimmu.2020.609456

Article

Tick-borne encephalitis virus (TBEV) prevalence in field-collected ticks (Ixodes ricinus) and phylogenetic, structural and virulence analysis in a TBE high-risk endemic area in southwestern Germany

Ott D, Ulrich K, Ginsbach P, Öhme R, Bock-Hensley O, Falk U, Teinert M & Lenhard T (2020) Tick-borne encephalitis virus (TBEV) prevalence in field-collected ticks (Ixodes ricinus) and phylogenetic, structural and virulence analysis in a TBE high-risk endemic area in southwestern Germany. Parasites and Vectors, 13, Art. No.: 303. https://doi.org/10.1186/s13071-020-04146-7

Article

A Hopeful Sea-Monster: A Very Large Homologous Recombination Event Impacting the Core Genome of the Marine Pathogen Vibrio anguillarum

Coyle NM, Bartie KL, Bayliss SC, Bekaert M, Adams A, McMillan S, Verner-Jeffreys DW, Desbois AP & Feil EJ (2020) A Hopeful Sea-Monster: A Very Large Homologous Recombination Event Impacting the Core Genome of the Marine Pathogen Vibrio anguillarum. Frontiers in Microbiology, 11, Art. No.: 1430. https://doi.org/10.3389/fmicb.2020.01430

Article

A T3SS Regulator Mutant of Vibrio alginolyticus Affects Antibiotic Susceptibilities and Provides Significant Protection to Danio rerio as a Live Attenuated Vaccine

Zhou S, Tu X, Pang H, Hoare R, Monaghan SJ, Luo J & Jian J (2020) A T3SS Regulator Mutant of Vibrio alginolyticus Affects Antibiotic Susceptibilities and Provides Significant Protection to Danio rerio as a Live Attenuated Vaccine. Frontiers in Cellular and Infection Microbiology, 10, Art. No.: 183. https://doi.org/10.3389/fcimb.2020.00183

Book Chapter

Development and Validation of Real-Time RT-LAMP Assays for the Specific Detection of Zika Virus

Lopez-Jimena B, Bakheit M, Bekaert M, Harold G, Frischmann S, Fall C, Diagne CT, Faye O, Faye O, Sall AA & Weidmann M (2020) Development and Validation of Real-Time RT-LAMP Assays for the Specific Detection of Zika Virus. In: Kobinger G & Racine T (eds.) Zika Virus: Methods and Protocols. Methods in Molecular Biology, 2142. New York: Springer, pp. 147-164. https://doi.org/10.1007/978-1-0716-0581-3_13

Book Chapter

Comparative Analysis of Zika Virus Detection by RT-qPCR, RT-LAMP, and RT-RPA

Diagne CT, Faye M, Lopez-Jimena B, Abd El Wahed A, Loucoubar C, Fall C, Mencatelli G, Faye O, Faye O, Weidmann M & Sall AA (2020) Comparative Analysis of Zika Virus Detection by RT-qPCR, RT-LAMP, and RT-RPA. In: Kobinger G & Racine T (eds.) Zika Virus: Methods and Protocols. Methods in Molecular Biology, 2142. New York: Springer, pp. 165-179. https://doi.org/10.1007/978-1-0716-0581-3_14

Book Chapter

Zika Virus Amplification Using Strand Displacement Isothermal Method and Sequencing Using Nanopore Technology

Hansen S, Faye O, Sanabani SS, Faye M, Böhlken-Fascher S, Faye O, Sall AA, Bekaert M, Weidmann M, Czerny C & Abd El Wahed A (2020) Zika Virus Amplification Using Strand Displacement Isothermal Method and Sequencing Using Nanopore Technology. In: Kobinger G & Racin T (eds.) Zika Virus: Methods and Protocols. Methods in Molecular Biology, 2142. New York: Springer, pp. 123-136. https://doi.org/10.1007/978-1-0716-0581-3_11

Book Chapter

Molecular Diagnostics of Ebola Patient Samples by Institut Pasteur de Dakar Mobile Laboratory in Guinea 2014-2016

Faye O, Diagne CT, Diallo A, Meyer E, Soropogui B, Fall G, Fall C, Magassouba N, Koivogui L, Keita S, Loucoubar C, Diop M, Weidmann M, Faye O & Sall AA (2020) Molecular Diagnostics of Ebola Patient Samples by Institut Pasteur de Dakar Mobile Laboratory in Guinea 2014-2016. In: Okware SI (ed.) Re-emerging Filovirus Diseases. London: InTech, pp. 71-81. https://doi.org/10.5772/intechopen.88263

Book Chapter

Impacts of climate change on aquaculture

Collins C, Bresnan E, Brown L, Falconer L, Guilder J, Jones L, Kennerley A, Malham S, Murray A & Stanley M (2020) Impacts of climate change on aquaculture. In: MCCIP Science Review 2020. Lowestoft: Marine Climate Change Impacts, p. 482–520. http://archive.mccip.org.uk/media/2031/21_aquaculture_2020.pdf; https://doi.org/10.14465/2020.arc21.aqu

Article

Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa

AmbuAli A, Monaghan SJ, McLean K, Inglis NF, Bekaert M, Wehner S & Bron JE (2020) Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa. Parasites and Vectors, 13 (1), Art. No.: 88. https://doi.org/10.1186/s13071-020-3964-z

Article

Reclassification of Francisella noatunensis subsp. orientalis Ottem et al. 2009 as Francisella orientalis sp. nov., Francisella noatunensis subsp. chilensis subsp. nov. and emended description of Francisella noatunensis

Ramirez-Paredes JG, Larsson P, Thompson KD, Penman DJ, Busse H, Ohrman C, Sjodin A, Soto E, Richards RH, Adams A & Colquhoun DJ (2020) Reclassification of Francisella noatunensis subsp. orientalis Ottem et al. 2009 as Francisella orientalis sp. nov., Francisella noatunensis subsp. chilensis subsp. nov. and emended description of Francisella noatunensis. International Journal of Systematic and Evolutionary Microbiology, 70 (3), p. 2034–2048. https://doi.org/10.1099/ijsem.0.004009

Article

Collagen extract obtained from Nile tilapia (Oreochromis niloticus L.) skin accelerates wound healing in rat model via up regulating VEGF, bFGF, and α-SMA genes expression

Elbialy ZI, Atiba A, Abdelnaby A, Al-Hawary II, Elsheshtawy A, El-Serehy HA, Abdel-Daim MM, Fadl SE & Assar DH (2020) Collagen extract obtained from Nile tilapia (Oreochromis niloticus L.) skin accelerates wound healing in rat model via up regulating VEGF, bFGF, and α-SMA genes expression. BMC Veterinary Research, 16 (1), Art. No.: 352. https://doi.org/10.1186/s12917-020-02566-2

Article

Identification of miR-145 as a Key Regulator Involved in LC-PUFA Biosynthesis by Targeting hnf4α in the Marine Teleost Siganus canaliculatus

Chen C, Zhang M, Li Y, Wang S, Xie D, Wen X, Hu Y, Shen J, He X, You C, Tocher DR & Monroig Ó (2020) Identification of miR-145 as a Key Regulator Involved in LC-PUFA Biosynthesis by Targeting hnf4α in the Marine Teleost Siganus canaliculatus. Journal of Agricultural and Food Chemistry, 68 (51), pp. 15123-15133. https://doi.org/10.1021/acs.jafc.0c04649

Article

Dietary supplementation with a specific mannan-rich yeast parietal fraction enhances the gut and skin mucosal barriers of Atlantic salmon (Salmo salar) and reduces its susceptibility to sea lice (Lepeophtheirus salmonis)

Leclercq E, Pontefract N, Rawling M, Valdenegro V, Aasum E, Andujar LV, Migaud H, Castex M & Merrifield D (2020) Dietary supplementation with a specific mannan-rich yeast parietal fraction enhances the gut and skin mucosal barriers of Atlantic salmon (Salmo salar) and reduces its susceptibility to sea lice (Lepeophtheirus salmonis). Aquaculture, 529, Art. No.: 735701. https://doi.org/10.1016/j.aquaculture.2020.735701