A comparative analysis of the response of the hepatic transcriptome to dietary docosahexaenoic acid in Atlantic salmon (Salmo salar) post-smolts

Citation

Glencross B, De Santis C, Bicskei B, Taggart J, Bron J, Betancor M & Tocher DR (2015) A comparative analysis of the response of the hepatic transcriptome to dietary docosahexaenoic acid in Atlantic salmon (Salmo salar) post-smolts. BMC Genomics, 16 (1), Art. No.: 684. https://doi.org/10.1186/s12864-015-1810-z

Abstract
Background: The present study aimed to explore the impact of dietary docosahexaenoic acid (DHA) on aspects of the metabolism of Atlantic salmon (Salmo salar). The effects of diets containing increasing levels of DHA (1 g kg−1, 3 g kg−1, 6 g kg−1, 10 g kg−1and 13 g kg−1) on the liver transcriptome of post-smolt salmon was examined to elucidate patterns of gene expression and responses of specific metabolic pathways. Total RNA was isolated from the liver of individual fish and analyzed using a custom gene expression 44K feature Atlantic salmon oligo-microarray.  Results: The expression of up to 911 unique annotated genes was significantly affected by dietary DHA inclusion relative to a low DHA reference diet. Analysis of a total of 797 unique genes were found with a significant linear correlation between expression level and dietary DHA. Gene-Set Enrichment Analysis (GSEA) identified a range of pathways that were significantly affected by dietary DHA content.  Conclusions: Pathways that showed a significant response to dietary DHA level included those for long-chain polyunsaturated fatty acid biosynthesis, fatty acid elongation, steroid biosynthesis, glycan biosynthesis, protein export and protein processing in the endoplasmic reticulum. These findings suggest that in addition to clear roles in influencing lipid metabolic pathways, DHA might also have key functional roles in other pathways distinct from lipid metabolism.

Keywords
Essential fatty acid; DHA; Gene expression; Transcriptome; Atlantic salmon; Microarray

Journal
BMC Genomics: Volume 16, Issue 1

People

Dr Monica Betancor

Associate Professor, Institute of Aquaculture

Professor James Bron

Professor, Institute of Aquaculture

Professor Brett Glencross

Honorary Professor, Institute of Aquaculture